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1

Working Memory and Vigilance as Multivariate Endophenotypes Related to Common Genetic Risk for Attention-Deficit/Hyperactivity Disorder

Nigg, Joel T., Gustafsson, Hanna C., Karalunas, Sarah L., Ryabinin, Peter, McWeeney, Shannon, Faraone, Stephen V., Mooney, Michael, Fair, Damien A., Wilmot, Beth

Journal:

Journal of the American Academy of Child & Adolescent Psychiatry

Year:

2018

Language:

english

File:

PDF, 758 KB

english, 2018

2

A Simulation Framework to Investigate in vitro Viral Infection Dynamics

Armand Bankhead III, Emiliano Mancini, Amy C. Sims, Ralph S. Baric, Shannon McWeeney, Peter M.A. Sloot

Journal:

Procedia Computer Science

Year:

2011

Language:

english

File:

PDF, 768 KB

english, 2011

3

plethy: management of whole body plethysmography data in R

Bottomly, Daniel, Wilmot, Beth, McWeeney, Shannon K

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 522 KB

english, 2015

4

Discovery and Characterization of Targetable NTRK Point Mutations in Hematologic Neoplasms

Joshi, Sunil Kumar, Qian, Kristin, Bisson, William H, Watanabe-Smith, Kevin, Huang, Ariane, Bottomly, Daniel, Traer, Elie, Tyner, Jeffrey W., McWeeney, Shannon K., Davare, Monika, Druker, Brian J., To

Journal:

Year:

2020

File:

PDF, 8.25 MB

2020

5

Localization of TFIIB binding regions using serial analysis of chromatin occupancy

Gregory S Yochum, Veena Rajaraman, Ryan Cleland, Shannon McWeeney

Journal:

BMC Molecular Biology

Year:

2007

Language:

english

File:

PDF, 303 KB

english, 2007

6

Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems

Jason E McDermott, Harish Shankaran, Amie J Eisfeld, Sarah E Belisle, Gabriele Neuman, Chengjun Li, Shannon McWeeney, Carol Sabourin, Yoshihiro Kawaoka, Michael G Katze, Katrina M Waters

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 739 KB

english, 2011

7

DNA Microarray and Proteomic Strategies for Understanding Alcohol Action

James M. Sikela, Erik J. MacLaren, Young Kim, Anis Karimpour-Fard, Wei-Wen Cai, Jonathan Pollack, Robert Hitzemann, John Belknap, Shannon McWeeney, Robnet T. Kerns, Chris Downing, Thomas E. Johnson, K

Journal:

Alcoholism: Clinical and Experimental Research

Year:

2006

Language:

english

File:

PDF, 131 KB

english, 2006

8

SNPs matter: impact on detection of differential expression

Walter, Nicole A R, McWeeney, Shannon K, Peters, Sandra T, Belknap, John K, Hitzemann, Robert, Buck, Kari J

Journal:

Year:

2007

Language:

english

File:

PDF, 192 KB

english, 2007

9

On the Integration of Alcohol-Related Quantitative Trait Loci and Gene Expression Analyses

Robert Hitzemann, Cheryl Reed, Barry Malmanger, Maureen Lawler, Barbara Hitzemann, Brendan Cunningham, Shannon McWeeney, John Belknap, Christina Harrington, Kari Buck, Tamara Phillips, John Crabbe

Journal:

Alcoholism: Clinical and Experimental Research

Year:

2004

Language:

english

File:

PDF, 153 KB

english, 2004

10

Complex Genetics of Interactions of Alcohol and CNS Function and Behavior

Douglas B. Matthews, Sanjiv V. Bhave, John K. Belknap, Cynthia Brittingham, Elissa J. Chesler, Robert J. Hitzemann, Paula L. Hoffmann, Lu Lu, Shannon McWeeney, Michael F. Miles, Boris Tabakoff, Robert

Journal:

Alcoholism: Clinical and Experimental Research

Year:

2005

Language:

english

File:

PDF, 138 KB

english, 2005

11

Short-term selective breeding for High and Low prepulse inhibition of the acoustic startle response; pharmacological characterization and QTL mapping in the selected lines

Robert Hitzemann, Barry Malmanger, John Belknap, Priscila Darakjian, Shannon McWeeney

Journal:

Pharmacology Biochemistry and Behavior

Year:

2008

Language:

english

File:

PDF, 665 KB

english, 2008

12

Similar gene expression profiles do not imply similar tissue functions

Itai Yanai, Jan O. Korbel, Stephanie Boue, Shannon K. McWeeney, Peer Bork, Martin J. Lercher

Journal:

Trends in Genetics

Year:

2006

Language:

english

File:

PDF, 226 KB

english, 2006

13

High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPs

Nicole AR Walter, Daniel Bottomly, Ted Laderas, Michael A Mooney, Priscila Darakjian, Robert P Searles, Christina A Harrington, Shannon K McWeeney, Robert Hitzemann, Kari J Buck

Journal:

Year:

2009

Language:

english

File:

PDF, 420 KB

english, 2009

14

Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse

Ovidiu D Iancu, Priscila Darakjian, Nicole AR Walter, Barry Malmanger, Denesa Oberbeck, John Belknap, Shannon McWeeney, Robert Hitzemann

Journal:

Year:

2010

Language:

english

File:

PDF, 926 KB

english, 2010

15

Defining the CREB Regulon: A Genome-Wide Analysis of Transcription Factor Regulatory Regions

Soren Impey, Sean R. McCorkle, Hyunjoo Cha-Molstad, Jami M. Dwyer, Gregory S. Yochum, Jeremy M. Boss, Shannon McWeeney, John J. Dunn, Gail Mandel, Richard H. Goodman

Journal:

Year:

2004

Language:

english

File:

PDF, 667 KB

english, 2004

16

Mapping cellular transcriptosomes in autopsied Alzheimer's disease subjects and relevant animal models

P. Hemachandra Reddy, Shannon McWeeney

Journal:

Neurobiology of Aging

Year:

2006

Language:

english

File:

PDF, 253 KB

english, 2006

17

Translational gene mapping of cognitive decline

Beth Wilmot, Shannon K. McWeeney, Randal R. Nixon, Thomas J. Montine, Jamie Laut, Christina A. Harrington, Jeffrey A. Kaye, Patricia L. Kramer

Journal:

Neurobiology of Aging

Year:

2008

Language:

english

File:

PDF, 501 KB

english, 2008

18

P1-227 Gene expression profiles of transcripts in amyloid precursor protein transgenic mice Up-regulation of mitochondrial metabolism and apoptotic genes is an early cellular change in Alzheimer's disease

P. Hemachandra Reddy, Shannon McWeeney, Byung Park, Maria Manczak, Ramana V. Gutala, Youngsin Jung, Vincent Yau, Robert Searles, Motomi Mori, Quinn Joseph

Journal:

Neurobiology of Aging

Year:

2004

Language:

english

File:

PDF, 321 KB

english, 2004

19

Renal Gene and Protein Expression Signatures for Prediction of Kidney Disease Progression

Wenjun Ju, Felix Eichinger, Markus Bitzer, Jun Oh, Shannon McWeeney, Celine C. Berthier, Kerby Shedden, Clemens D. Cohen, Anna Henger, Stefanie Krick, Jeffrey B. Kopp, Christian J. Stoeckert Jr., Stev

Journal:

The American Journal of Pathology

Year:

2009

Language:

english

File:

PDF, 2.86 MB

english, 2009

20

Brain size genes and risk of dementia

Deniz Erten-Lyons, Beth Wilmot, Pavana Anur, Patricia Kramer, Shannon McWeeney, Shawn Westaway, Jeffrey Kaye

Journal:

Alzheimer's & Dementia

Year:

2010

Language:

english

File:

PDF, 44 KB

english, 2010

21

Selection for Drinking in the Dark Alters Brain Gene Coexpression Networks

Iancu, Ovidiu D., Oberbeck, Denesa, Darakjian, Priscila, Metten, Pamela, McWeeney, Shannon, Crabbe, John C., Hitzemann, Robert

Journal:

Alcoholism: Clinical and Experimental Research

Year:

2013

Language:

english

File:

PDF, 391 KB

english, 2013

22

Oncogenic CSF3R Mutations in Chronic Neutrophilic Leukemia and Atypical CML

Maxson, Julia E., Gotlib, Jason, Pollyea, Daniel A., Fleischman, Angela G., Agarwal, Anupriya, Eide, Christopher A., Bottomly, Daniel, Wilmot, Beth, McWeeney, Shannon K., Tognon, Cristina E., Pond, J.

Journal:

Boston Medical and Surgical Journal

Year:

2013

Language:

english

File:

PDF, 1.11 MB

english, 2013

23

Systems immunogenetics of vaccines

Mooney, Michael, McWeeney, Shannon, Sékaly, Rafick-Pierre

Journal:

Seminars in Immunology

Year:

2013

Language:

english

File:

PDF, 1.14 MB

english, 2013

24

A systems framework for vaccine design

Mooney, Michael, McWeeney, Shannon, Canderan, Glenda, Sékaly, Rafick-Pierre

Journal:

Current Opinion in Immunology

Year:

2013

Language:

english

File:

PDF, 359 KB

english, 2013

25

The genetics of gene expression in complex mouse crosses as a tool to study the molecular underpinnings of behavior traits

Hitzemann, Robert, Bottomly, Daniel, Iancu, Ovidiu, Buck, Kari, Wilmot, Beth, Mooney, Michael, Searles, Robert, Zheng, Christina, Belknap, John, Crabbe, John, McWeeney, Shannon

Journal:

Mammalian Genome

Year:

2014

Language:

english

File:

PDF, 340 KB

english, 2014

26

Comparison of methods to identify aberrant expression patterns in individual patients: augmenting our toolkit for precision medicine

Bottomly, Daniel, Ryabinin, Peter A, Tyner, Jeffrey W, Chang, Bill H, Loriaux, Marc M, Druker, Brian J, McWeeney, Shannon K, Wilmot, Beth

Journal:

Genome Medicine

Year:

2013

Language:

english

File:

PDF, 428 KB

english, 2013

27

Genetic factors involved in risk for methamphetamine intake and sensitization

Belknap, John K., McWeeney, Shannon, Reed, Cheryl, Burkhart-Kasch, Sue, McKinnon, Carrie S., Li, Na, Baba, Harue, Scibelli, Angela C., Hitzemann, Robert, Phillips, Tamara J.

Journal:

Mammalian Genome

Year:

2013

Language:

english

File:

PDF, 489 KB

english, 2013

28

Cytomegalovirus miRNAs Target Secretory Pathway Genes to Facilitate Formation of the Virion Assembly Compartment and Reduce Cytokine Secretion

Hook, Lauren M., Grey, Finn, Grabski, Robert, Tirabassi, Rebecca, Doyle, Tracy, Hancock, Meaghan, Landais, Igor, Jeng, Sophia, McWeeney, Shannon, Britt, William, Nelson, Jay A.

Journal:

Cell Host & Microbe

Year:

2014

Language:

english

File:

PDF, 1.83 MB

english, 2014

29

Distribution of Menin-Occupied Regions in Chromatin Specifies a Broad Role of Menin in Transcriptional Regulation

Agarwal, Sunita K., Impey, Soren, McWeeney, Shannon, Scacheri, Peter C., Collins, Francis S., Goodman, Richard H., Spiegel, Allen M., Marx, Stephen J.

Journal:

Year:

2007

Language:

english

File:

PDF, 176 KB

english, 2007

30

Convergence of Divergent Tumors: A Systems Biology Approach of Tumor-specific Signaling

Huang, J., McWeeney, S., Davis, S., Tarca, A., Freudenberg, J., Shannon, P., Supinski, M., Chow, M., Thomas, C.R., Zundel, W.

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2012

Language:

english

File:

PDF, 84 KB

english, 2012

31

A simulation framework to investigate in vitro viral infection dynamics

Bankhead, Armand, Mancini, Emiliano, Sims, Amy C., Baric, Ralph S., McWeeney, Shannon, Sloot, Peter M.A.

Journal:

Journal of Computational Science

Year:

2013

Language:

english

File:

PDF, 1.24 MB

english, 2013

32

Functional and genomic context in pathway analysis of GWAS data

Mooney, Michael A., Nigg, Joel T., McWeeney, Shannon K., Wilmot, Beth

Journal:

Trends in Genetics

Year:

2014

Language:

english

File:

PDF, 1.01 MB

english, 2014

33

Protein Database and Quantitative Analysis Considerations when Integrating Genetics and Proteomics to Compare Mouse Strains

Fei, Suzanne S., Wilmarth, Phillip A., Hitzemann, Robert J., McWeeney, Shannon K., Belknap, John K., David, Larry L.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 1.84 MB

english, 2011

34

‘Pitfalls in the application of gene set analysis to genetics studies’: a response

Mooney, Michael A., Nigg, Joel T., McWeeney, Shannon K., Wilmot, Beth

Journal:

Trends in Genetics

Year:

2014

Language:

english

File:

PDF, 109 KB

english, 2014

35

Consensus Framework for Exploring Microarray Data Using Multiple Clustering Methods

Laderas, Ted, McWeeney, Shannon

Journal:

Omics A Journal of Integrative Biology

Year:

2007

Language:

english

File:

PDF, 9.53 MB

english, 2007

36

Maternal high-fat diet and obesity compromise fetal hematopoiesis

Kamimae-Lanning, Ashley N., Krasnow, Stephanie M., Goloviznina, Natalya A., Zhu, Xinxia, Roth-Carter, Quinn R., Levasseur, Peter R., Jeng, Sophia, McWeeney, Shannon K., Kurre, Peter, Marks, Daniel L.

Journal:

Molecular Metabolism

Year:

2015

Language:

english

File:

PDF, 4.38 MB

english, 2015

37

Splicing landscape of the eight collaborative cross founder strains

Zheng, Christina L, Wilmot, Beth, Walter, Nicole, Oberbeck, Denesa, Kawane, Sunita, Searles, Robert P, McWeeney, Shannon K, Hitzemann, Robert

Journal:

Year:

2015

Language:

english

File:

PDF, 737 KB

english, 2015

38

Microcephaly Genes and Risk of Late-onset Alzheimer Disease

Erten-Lyons, Deniz, Wilmot, Beth, Anur, Pavana, McWeeney, Shannon, Westaway, Shawn K., Silbert, Lisa, Kramer, Patricia, Kaye, Jeffrey

Journal:

Alzheimer Disease & Associated Disorders

Year:

2011

Language:

english

File:

PDF, 140 KB

english, 2011

39

Influenza Vaccination of Pregnant Women: Attitudes and Behaviors of Oregon Physician Prenatal Care Providers

Arao, Robert F., Rosenberg, Kenneth D., McWeeney, Shannon, Hedberg, Katrina

Journal:

Maternal and Child Health Journal

Year:

2015

Language:

english

File:

PDF, 188 KB

english, 2015

40

Dual-Trait Selection for Ethanol Consumption and Withdrawal: Genetic and Transcriptional Network Effects

Metten, Pamela, Iancu, Ovidiu D., Spence, Stephanie E., Walter, Nicole A. R., Oberbeck, Denesa, Harrington, Christina A., Colville, Alexandre, McWeeney, Shannon, Phillips, Tamara J., Buck, Kari J., Cr

Journal:

Alcoholism: Clinical and Experimental Research

Year:

2014

Language:

english

File:

PDF, 628 KB

english, 2014

41

Androgen Receptor Promotes Ligand-Independent Prostate Cancer Progression through c-Myc Upregulation

Gao, Lina, Schwartzman, Jacob, Gibbs, Angela, Lisac, Robert, Kleinschmidt, Richard, Wilmot, Beth, Bottomly, Daniel, Coleman, Ilsa, Nelson, Peter, McWeeney, Shannon, Alumkal, Joshi, Kyprianou, Natasha

Journal:

Year:

2013

Language:

english

File:

PDF, 1.79 MB

english, 2013

42

A Viral microRNA Down-Regulates Multiple Cell Cycle Genes through mRNA 5′UTRs

Grey, Finn, Tirabassi, Rebecca, Meyers, Heather, Wu, Guanming, McWeeney, Shannon, Hook, Lauren, Nelson, Jay A., Britt, William J.

Journal:

Year:

2010

Language:

english

File:

PDF, 652 KB

english, 2010

43

Human Cytomegalovirus miR-UL112-3p Targets TLR2 and Modulates the TLR2/IRAK1/NFκB Signaling Pathway

Landais, Igor, Pelton, Chantel, Streblow, Daniel, DeFilippis, Victor, McWeeney, Shannon, Nelson, Jay A., Dittmer, Dirk P.

Journal:

Year:

2015

Language:

english

File:

PDF, 617 KB

english, 2015

44

Between pathways and networks lies context: implications for precision medicine

Laderas, Ted, Wu, Guanming, Mcweeney, Shannon

Journal:

Science Progress

Year:

2015

Language:

english

File:

PDF, 3.88 MB

english, 2015

45

Deoxyribonucleic Acid Microarray Analysis of Gene Expression Pattern in the Arcuate Nucleus/Ventromedial Nucleus of Hypothalamus during Lactation

Xiao, Xiao Qiu, Grove, Kevin L., Lau, See Yan, McWeeney, Shannon, Smith, M. Susan

Journal:

Year:

2005

Language:

english

File:

PDF, 283 KB

english, 2005

46

Evidence for linkage and association to alcohol dependence on chromosome 19

Valdes, Ana M., McWeeney, Shannon K., Thomson, Glenys

Journal:

Genetic Epidemiology

Year:

1999

Language:

english

File:

PDF, 404 KB

english, 1999

47

HitWalker2: visual analytics for precision medicine and beyond

Bottomly, Daniel, McWeeney, Shannon K., Wilmot, Beth

Journal:

Year:

2016

Language:

english

File:

PDF, 160 KB

english, 2016

48

IL-10 and integrin signaling pathways are associated with head and neck cancer progression

Bornstein, Sophia, Schmidt, Mark, Choonoo, Gabrielle, Levin, Trevor, Gray, Joe, Thomas, Charles R., Wong, Melissa, McWeeney, Shannon

Journal:

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

49

Use of semantic workflows to enhance transparency and reproducibility in clinical omics

Zheng, Christina L., Ratnakar, Varun, Gil, Yolanda, McWeeney, Shannon K.

Journal:

Genome Medicine

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

50

Pathway analysis in attention deficit hyperactivity disorder: An ensemble approach

Mooney, Michael A., McWeeney, Shannon K., Faraone, Stephen V., Hinney, Anke, Hebebrand, Johannes, Nigg, Joel T., Wilmot, Beth

Journal:

American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

Year:

2016

Language:

english

File:

PDF, 941 KB

english, 2016